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Do NOT report bugs when a package is just outdated, or it is in Unsupported. Use the 'flag out of date' link on the package page, or the Mailing List.
REPEAT: Do NOT report bugs for outdated packages!
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FS#65115 - Scotch cannot be installed on a 2 core cpu.
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Attached to Project: Community Packages
Opened by Volker Weißmann (volker_weissmann) - Saturday, 11 January 2020, 19:56 GMT
Last edited by Santiago Torres (sangy) - Saturday, 11 January 2020, 20:49 GMT
Opened by Volker Weißmann (volker_weissmann) - Saturday, 11 January 2020, 19:56 GMT
Last edited by Santiago Torres (sangy) - Saturday, 11 January 2020, 20:49 GMT
| DetailsDescription: You cannot install scotch on a 2 core cpu Steps to reproduce: Run the following commands on a cpu with 2 cores. $ git clone https://aur.archlinux.org/scotch.git $ cd scotch $ makepkg -si Expected behaviour: It should install scotch. Actual behaviour: The makepkg fails with the following output: ... mpicc -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fPIC -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_FILE_COMPRESS_BZ2 -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict=__restrict -DIDXSIZE64 -DSCOTCH_PTSCOTCH -I../../in clude -L../../lib test_scotch_dgraph_check.c -o test_scotch_dgraph_check -lptscotch -lscotch -lptscotcherr -lz -lbz2 -lm -lrt -pthread -Xlinker --no-as-needed mpirun -n 3 ./test_scotch_dgraph_check data/bump.grf -------------------------------------------------------------------------- There are not enough slots available in the system to satisfy the 3 slots that were requested by the application: ./test_scotch_dgraph_check Either request fewer slots for your application, or make more slots available for use. A 'slot' is the Open MPI term for an allocatable unit where we can launch a process. The number of slots available are defined by the environment in which Open MPI processes are run: 1. Hostfile, via 'slots=N' clauses (N defaults to number of processor cores if not provided) 2. The --host command line parameter, via a ':N' suffix on the hostname (N defaults to 1 if not provided) 3. Resource manager (e.g., SLURM, PBS/Torque, LSF, etc.) 4. If none of a hostfile, the --host command line parameter, or an RM is present, Open MPI defaults to the number of processor cores In all the above cases, if you want Open MPI to default to the number of hardware threads instead of the number of processor cores, use the --use-hwthread-cpus option. Alternatively, you can use the --oversubscribe option to ignore the number of available slots when deciding the number of processes to launch. -------------------------------------------------------------------------- make[2]: *** [Makefile:309: check_scotch_dgraph_check] Error 1 make[2]: Leaving directory '/home/volker/Sync/DatenVolker/scripts/ArchInstallation/scotch/src/scotch-v6.0.6/src/check' make[1]: *** [Makefile:74: ptcheck] Error 2 make[1]: Leaving directory '/home/volker/Sync/DatenVolker/scripts/ArchInstallation/scotch/src/scotch-v6.0.6/src/check' make: *** [Makefile:110: ptcheck] Error 2 > ERROR: A failure occurred in check(). Aborting... |
Closed by Santiago Torres (sangy)
Saturday, 11 January 2020, 20:49 GMT
Reason for closing: Not a bug
Additional comments about closing: AUR packages are not community packages.I see that the low CPU count issue wasalready brought up on the AURcomments.
Regardless, I'm not sure if this isan issue with the PKGBUILD but rather anissue with the upstream makefile. Itcould be possible to script this insideof the upstream makefile to pass--oversubscribe only if cpu count isless than 3
Saturday, 11 January 2020, 20:49 GMT
Reason for closing: Not a bug
Additional comments about closing: AUR packages are not community packages.I see that the low CPU count issue wasalready brought up on the AURcomments.
Regardless, I'm not sure if this isan issue with the PKGBUILD but rather anissue with the upstream makefile. Itcould be possible to script this insideof the upstream makefile to pass--oversubscribe only if cpu count isless than 3
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